com.scigantic/mcp

up checked 2026-11-11T00:38:02.908Z

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Publisher-provided title

Scigantic

Publisher-provided description

Search public scientific datasets and read schema cards that describe their files, columns and rows

Summary by lookupd

Searches public scientific datasets and reads schema cards, file lists, and sample notebooks; also looks up arXiv papers and SureChEMBL…

Install

Claude Code, remote (streamable-http)

claude mcp add --transport http mcp https://api.scigantic.com/mcp

Claude Code, pypi package (stdio)

claude mcp add mcp -- uvx scigantic-mcp

Codex, remote (streamable-http)

codex mcp add mcp --url https://api.scigantic.com/mcp

Codex, pypi package (stdio)

codex mcp add mcp -- uvx scigantic-mcp

Cursor, remote (streamable-http) → .cursor/mcp.json

{
  "mcpServers": {
    "mcp": {
      "url": "https://api.scigantic.com/mcp"
    }
  }
}

Cursor, pypi package (stdio) → .cursor/mcp.json

{
  "mcpServers": {
    "mcp": {
      "command": "uvx",
      "args": [
        "scigantic-mcp"
      ]
    }
  }
}

Other clients: docs. Or tell your agent: Set up lookupd for me: read https://lookupd.com/agent.md and follow it.

Tools (16 tools)

Publisher-provided text

• search_archives Search the Scigantic catalog of public scientific data archives by natural-language query. Matching considers both the archive's description AND a sample of its
• get_archive Get full metadata for one archive by id, including its schema card (structure summary) when one exists.
• get_schema_card Get the compact schema card for an archive: file format, columns, sample rows/headers, sidecar docs (READMEs/data dictionaries) and a copy-paste starter cell. T
• get_data_access Get how to load a dataset in YOUR OWN environment: storage location plus copy-paste code snippets (from the dataset's schema card, or generated as a fallback).
• list_archive_files List a sample of the files/objects in an archive's storage (the cached file tree).
• get_sample_notebook Get the pre-executed starter notebook for an archive — a worked example of loading and exploring the data. Returns a cell-by-cell summary plus each cell's sourc
• lookup_paper Look up a research paper on arXiv, by bare arXiv id (e.g. "1706.03762") or by keywords/title, and return its metadata plus any Scigantic archives linked to or s
• list_compute_tiers List the compute tiers available for launching a Scigantic notebook (CPU/GPU options and hourly cost).
• search Search the Scigantic catalog of public scientific datasets. Returns matching datasets as {results: [{id, title, url}]}; pass an id to fetch for the full descrip
• fetch Fetch one Scigantic dataset by id (from search): its description, storage location, source link, and schema card (format, columns, sample rows, caveats, and how
• surechembl_compound Look up a compound in SureChEMBL, EMBL-EBI's database of chemistry extracted from patents, by any identifier, and report its structure, properties, cross-refere
• surechembl_patents_for_compound List the patents in which a compound was found (SureChEMBL). Accepts the same identifier forms as surechembl_compound. Aspirin is in ~700,000 documents, so read
• surechembl_patent A patent document from SureChEMBL: title, dates, applicants, inventors, assignees, family, priority claims, number of compounds named in the text, abstract, and
• surechembl_patent_chemistry The compounds SureChEMBL's text-mining finds named in a patent's text: SCHEMBL id, name, SMILES, InChIKey, formula, weight. Structures that appear only in image
• surechembl_search_patents Full-text patent search over SureChEMBL with Solr syntax. Plain terms search all text; field prefixes narrow: ttl (title), ab (abstract), clm (claims), desc, as
• surechembl_structure_search Search SureChEMBL's 31 million patent compounds by chemical structure.

Details

• Version: 0.3.2
• Transports: streamable-http, stdio
• Uptime (7 days): 100%
• Median latency: 296 ms
• First indexed: 2026-11-10T00:17:20.400Z
• Last seen in registry: 2026-11-10T01:17:22.144Z
• Repository: https://github.com/Scigantic/scigantic-mcp
• Website: https://scigantic.com

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