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io.github.ammawla/encode-toolkit

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Publisher-provided title

ENCODE Toolkit

Publisher-provided description

20 MCP tools + 48 skills for ENCODE Project genomics — search, download, pipelines

Summary by lookupd

Lets agents search, download, and run pipelines on ENCODE Project genomics datasets through 20 MCP tools and 48 skills.

Install

Claude Code, npm package (stdio)

claude mcp add encode-toolkit -- npx -y encode-toolkit

Claude Code, pypi package (stdio)

claude mcp add encode-toolkit -- uvx encode-toolkit

Codex, npm package (stdio)

codex mcp add encode-toolkit -- npx -y encode-toolkit

Codex, pypi package (stdio)

codex mcp add encode-toolkit -- uvx encode-toolkit

Cursor, npm package (stdio) → .cursor/mcp.json

{
  "mcpServers": {
    "encode-toolkit": {
      "command": "npx",
      "args": [
        "-y",
        "encode-toolkit"
      ]
    }
  }
}

Cursor, pypi package (stdio) → .cursor/mcp.json

{
  "mcpServers": {
    "encode-toolkit": {
      "command": "uvx",
      "args": [
        "encode-toolkit"
      ]
    }
  }
}

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