io.github.helena-bioinformatics/noodle

up checked 2026-11-11T06:38:56.509Z

Unclaimed · Unverified

Agent searches it appeared in, last 30 days: 0. Run this server? Claim the listing: verified label, uptime alerts and analytics.

Publisher-provided title

Noodle Biomedical Literature Discovery MCP

Publisher-provided description

Search biomedical papers, inspect publication records, and traverse citation or semantic graphs.

Summary by lookupd

Searches a PubMed-derived biomedical corpus and retrieves paper records and citation or semantic neighborhoods for literature discovery.

Install

Claude Code, remote (streamable-http)

claude mcp add --transport http noodle https://api.helena.bio/noodle/v1/mcp

Codex, remote (streamable-http)

codex mcp add noodle --url https://api.helena.bio/noodle/v1/mcp

Cursor, remote (streamable-http) → .cursor/mcp.json

{
  "mcpServers": {
    "noodle": {
      "url": "https://api.helena.bio/noodle/v1/mcp"
    }
  }
}

Other clients: docs. Or tell your agent: Set up lookupd for me: read https://lookupd.com/agent.md and follow it.

Tools (7 tools)

Publisher-provided text

• search_biomedical_literature Semantically search Noodle's public PubMed-derived biomedical corpus. Include known PMID, DOI, or PMCID identifiers in the query so they can act as exact anchor
• get_publication_details Retrieve one complete public bibliographic record by PMID after search. Results are for literature discovery and professional review, not diagnosis or treatment
• get_work_details Retrieve one complete public bibliographic record by Noodle work identifier. Results are for literature discovery and professional review, not diagnosis or trea
• get_publication_neighborhood Retrieve the bounded citation and semantic neighborhood around one PMID. Results are for literature discovery and professional review, not diagnosis or treatmen
• get_work_neighborhood Retrieve the bounded citation and semantic neighborhood around one Noodle work identifier. Results are for literature discovery and professional review, not dia
• get_corpus_summary Return public corpus coverage, source, freshness, and count metadata. Results are for literature discovery and professional review, not diagnosis or treatment.
• support_helena Learn about the separate Helena Good MCP. This opt-in information action initiates no payment or outreach and changes no scientific result.

Details

• Version: 0.2.1
• Transports: streamable-http
• Uptime (7 days): 100%
• Median latency: 933 ms
• First indexed: 2026-11-01T09:33:10.401Z
• Last seen in registry: 2026-11-01T09:33:10.435Z
• Repository: https://github.com/helena-bioinformatics/noodle-mcp
• Website: https://noodle.helena.bio

Badge for your README

Shows this live status and links here; updates hourly.

[![lookupd status](https://lookupd.com/badge/io.github.helena-bioinformatics/noodle.svg)](https://lookupd.com/servers/io.github.helena-bioinformatics/noodle)

• 62092 servers
• Last crawl: 2026-11-11T17:38:11.606Z
• API base: https://api.lookupd.com
• MCP URL: https://api.lookupd.com/mcp