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io.github.mrfentmen/pathway-commons-mcp

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Publisher-provided description

Pathway Commons graph search: find pathways, proteins and complexes by name

Summary by lookupd

Lets an agent search biological pathway graphs to look up pathways, proteins and complexes by name.

Install

Claude Code, npm package (stdio)

claude mcp add pathway-commons -- npx -y @mrfentmen/pathway-commons-mcp

Codex, npm package (stdio)

codex mcp add pathway-commons -- npx -y @mrfentmen/pathway-commons-mcp

Cursor, npm package (stdio) → .cursor/mcp.json

{
  "mcpServers": {
    "pathway-commons": {
      "command": "npx",
      "args": [
        "-y",
        "@mrfentmen/pathway-commons-mcp"
      ]
    }
  }
}

Other clients: docs. Or tell your agent: Set up lookupd for me: read https://lookupd.com/agent.md and follow it.

Details

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