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io.github.mrfentmen/snakemake-mcp

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Publisher-provided description

Snakemake MCP: 20 real tools to read, check, lint, scaffold, build and run Snakemake code.

Summary by lookupd

Lets an agent read, lint, scaffold, and run Snakemake workflow files, using 20 tools for pipeline building.

Install

Claude Code, npm package (stdio)

claude mcp add snakemake -- npx -y @mrfentmen/snakemake-mcp

Codex, npm package (stdio)

codex mcp add snakemake -- npx -y @mrfentmen/snakemake-mcp

Cursor, npm package (stdio) → .cursor/mcp.json

{
  "mcpServers": {
    "snakemake": {
      "command": "npx",
      "args": [
        "-y",
        "@mrfentmen/snakemake-mcp"
      ]
    }
  }
}

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