io.github.open-mtor-atlas/mtor-atlas

up checked 2026-11-11T13:38:35.495Z

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Publisher-provided title

Oliver's mTOR Atlas

Publisher-provided description

Evidence-labelled mTOR research: studies, entities, pathway claims, contradictions, open questions.

Summary by lookupd

Lets agents search curated mTOR studies, entities, pathway relations, contradictions and open questions with evidence codes and citations.

Install

Claude Code, remote (streamable-http)

claude mcp add --transport http mtor-atlas https://mtor-atlas-mcp.mtor-atlas.workers.dev/mcp

Claude Code, npm package (stdio)

claude mcp add mtor-atlas -- npx -y mtor-atlas-mcp

Codex, remote (streamable-http)

codex mcp add mtor-atlas --url https://mtor-atlas-mcp.mtor-atlas.workers.dev/mcp

Codex, npm package (stdio)

codex mcp add mtor-atlas -- npx -y mtor-atlas-mcp

Cursor, remote (streamable-http) → .cursor/mcp.json

{
  "mcpServers": {
    "mtor-atlas": {
      "url": "https://mtor-atlas-mcp.mtor-atlas.workers.dev/mcp"
    }
  }
}

Cursor, npm package (stdio) → .cursor/mcp.json

{
  "mcpServers": {
    "mtor-atlas": {
      "command": "npx",
      "args": [
        "-y",
        "mtor-atlas-mcp"
      ]
    }
  }
}

Other clients: docs. Or tell your agent: Set up lookupd for me: read https://lookupd.com/agent.md and follow it.

Tools (13 tools)

Publisher-provided text

• atlas_about Dataset version, corpus snapshot date, counts, evidence-code legend and how to cite the dataset. When the Atlas does not report the contested and conflicting co
• search_studies Search the curated studies by keywords, optionally filtered by evidence code, a linked entity (gene, drug, disease...) and year range. Searches title, finding,
• get_study Full record for one study by Atlas ID (e.g. "SAB1994"), PMID, DOI or PMCID: abstract excerpt, extracted findings, linked entities, the relations it supports or
• search_entities Find genes/proteins, complexes, drugs, diseases, processes, nutrients and outcomes by name or synonym. Each result says where it matched (match_field: name, syn
• get_entity One entity (gene/protein, complex, drug, disease, process...) with its linked studies as short cards (first studies_limit) and every pathway relation it takes p
• find_relations Signed, evidence-linked pathway relations (claims such as "Rheb activates mTORC1"). Filter by an entity on either end, by source/target, effect, contested statu
• get_relation One pathway relation by ID (e.g. "RHEB-MTORC1"): mechanism, boundary conditions, confidence, supporting and conflicting studies.
• evidence_between Direct curated relations between two entities (either direction) with full cards for the supporting and conflicting studies. Answers questions such as "what is
• find_contradictions Relations the Atlas marks as contested or that carry conflicting studies, with both sides of the evidence. status says which; breakdown splits the total. confli
• list_questions The Atlas's open questions (evidence gaps with testable hypotheses) and frontier questions. Paged. By default still_open is shortened at a sentence boundary (st
• get_question One open or frontier question by ID (e.g. "H1", "F2"): the gap, what changed, what is still open, how it could be tested, linked studies.
• search_authors People in the Atlas by full name ("Claudio De Virgilio"), author-list form ("De Virgilio C"), ORCID or lab. results are authors with a profile page (full name,
• get_author One profiled author by profile id ("claudio-de-virgilio"), full name, author-list form or ORCID: lab, role, profile URL and short cards of their studies in the

Details

• Version: 1.3.3
• Transports: streamable-http, stdio
• Uptime (7 days): 100%
• Median latency: 370 ms
• First indexed: 2026-11-01T09:43:59.714Z
• Last seen in registry: 2026-11-01T09:43:59.773Z
• Repository: https://github.com/open-mtor-atlas/atlas
• Website: https://mtor-atlas.org/api/

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• Last crawl: 2026-11-11T18:39:04.612Z
• API base: https://api.lookupd.com
• MCP URL: https://api.lookupd.com/mcp