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io.github.trentleslie/biomapper

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Publisher-provided title

BioMapper

Publisher-provided description

Resolve metabolite, lipid, protein, gene and lab names to knowledge-graph IDs.

Summary by lookupd

Resolves metabolite, lipid, protein, gene and lab names to identifiers in a biomedical knowledge graph.

Install

Claude Code, pypi package (stdio)

claude mcp add biomapper -- uvx biomapper

Codex, pypi package (stdio)

codex mcp add biomapper -- uvx biomapper

Cursor, pypi package (stdio) → .cursor/mcp.json

{
  "mcpServers": {
    "biomapper": {
      "command": "uvx",
      "args": [
        "biomapper"
      ]
    }
  }
}

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