io.github.unibio-intelligence/biomedmcp

up checked 2026-11-11T08:40:16.685Z

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Publisher-provided title

biomedmcp

Publisher-provided description

Integrated public biomedical research with cited, bounded evidence.

Summary by lookupd

Searches biomedical literature, genes, variants, drugs and clinical trials, returning cited evidence with quotas and variant or cohort…

Install

Claude Code, remote (streamable-http)

claude mcp add --transport http biomedmcp https://biomedmcp.unibiointelligence.com/mcp

Claude Code, pypi package (stdio)

claude mcp add biomedmcp -- uvx biomedmcp

Codex, remote (streamable-http)

codex mcp add biomedmcp --url https://biomedmcp.unibiointelligence.com/mcp

Codex, pypi package (stdio)

codex mcp add biomedmcp -- uvx biomedmcp

Cursor, remote (streamable-http) → .cursor/mcp.json

{
  "mcpServers": {
    "biomedmcp": {
      "url": "https://biomedmcp.unibiointelligence.com/mcp"
    }
  }
}

Cursor, pypi package (stdio) → .cursor/mcp.json

{
  "mcpServers": {
    "biomedmcp": {
      "command": "uvx",
      "args": [
        "biomedmcp"
      ]
    }
  }
}

Other clients: docs. Or tell your agent: Set up lookupd for me: read https://lookupd.com/agent.md and follow it.

Tools (13 tools)

Publisher-provided text

• search_records Search genes, proteins, drugs, diseases, phenotypes, pathways, variants, pharmacogenomics, GWAS, diagnostics, adverse events, studies, patents or authors by tex
• get_record Fetch one record by ID with optional evidence sections, e.g. gene expression/eqtl/diseases/druggability, drug label/safety, article fulltext, trial eligibility,
• search_literature Search papers across PubMed, Europe PMC, PubTator and LitSense with date, author, journal, article-type and open-access filters. Deduplicates across sources and
• search_trials Search clinical trials (ClinicalTrials.gov, NCI) by condition, intervention, phase and recruitment status. Read arms, eligibility or outcomes with get_record(en
• get_variant_evidence Get evidence for one variant (rsID, gene + protein change, HGVS or chr:pos:ref:alt). Defaults: ClinVar, gnomAD population, CIViC; add predictions (AlphaMissense
• analyze_study Analyze an installed public cancer genomics study: gene_profile, mutation_cohort, survival, compare, co_occurrence, filter_cohort, top_mutated. List installed s
• resolve_entity Map a name, alias or ambiguous identifier to exact species-qualified IDs before joining evidence. Returns candidates when ambiguous; a provider match score alon
• find_related List records linked to one record. gene/drug/disease: articles, trials. variant: articles, structure. article: citations, references, recommendations, authors,
• build_dossier Build a multi-section dossier in one call: verified identity, default record sections and top related papers, with citations and per-source outcomes. Workflows:
• query_source Run a source-specific operation that other tools do not cover, e.g. ChEMBL bioactivities, Ensembl coordinates, PDB structure quality, OmniPath interactions, NCB
• run_batch Run up to ten independent read calls in parallel with one quota reservation; each result keeps its own outcome. build_dossier and utilities are not batchable. e
• get_capabilities List enabled sources, entity sections, dossier workflows and source operations with exact parameter schemas. Narrow with source or entity; diagnose=true probes
• get_quota Show remaining research allowance and reset times; signed-in accounts get higher limits. e.g. {}

Details

• Version: 0.2.6
• Transports: streamable-http, stdio
• Uptime (7 days): 100%
• Median latency: 694 ms
• First indexed: 2026-11-05T05:17:17.375Z
• Last seen in registry: 2026-11-08T20:17:24.064Z
• Repository: https://github.com/unibio-intelligence/biomedmcp

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• 62141 servers
• Last crawl: 2026-11-11T18:17:25.333Z
• API base: https://api.lookupd.com
• MCP URL: https://api.lookupd.com/mcp