org.virtualflybrain/vfb3-mcp

up checked 2026-11-11T04:38:21.239Z

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Publisher-provided title

VirtualFlyBrain

Publisher-provided description

MCP server for Drosophila neuroscience data from VirtualFlyBrain

Summary by lookupd

Queries Drosophila neuroscience data: search terms, fetch term info, compare connectivity across connectomes, and resolve neuron and…

Install

Claude Code, remote (streamable-http)

claude mcp add --transport http vfb3 https://vfb3-mcp.virtualflybrain.org

Codex, remote (streamable-http)

codex mcp add vfb3 --url https://vfb3-mcp.virtualflybrain.org

Cursor, remote (streamable-http) → .cursor/mcp.json

{
  "mcpServers": {
    "vfb3": {
      "url": "https://vfb3-mcp.virtualflybrain.org"
    }
  }
}

Other clients: docs. Or tell your agent: Set up lookupd for me: read https://lookupd.com/agent.md and follow it.

Tools (11 tools)

Publisher-provided text

• get_term_info Get term info for a VFB or anatomy ontology entity (VFB_*, FBbt_*, etc.). THIS IS THE QUERY DISCOVERY TOOL: the response's "Queries" array lists the valid query
• run_query Run a pre-computed query on a VFB entity. REQUIRED WORKFLOW: (1) call get_term_info on the ID first; (2) read the response's "Queries" array; (3) pass one of th
• search_terms Search VFB terms. This is the search virtualflybrain.org itself runs — the same Solr query, the same ranking — so what comes back first here is what a user woul
• list_search_facets List the type names search_terms can filter, exclude, boost or demote by, with the number of terms carrying each one. Call this instead of guessing: there are o
• resolve_entity Resolve an unresolved FlyBase-related query string into VFB/FlyBase IDs and metadata. Pass the raw text exactly as the user wrote it (for example "P{VT054895-GA
• resolve_combination Resolve an unresolved split-GAL4 combination name or synonym into its FBco ID and component hemidrivers. Pass the raw combination text exactly as the user wrote
• list_connectome_datasets List available connectome datasets with their labels and symbols. Use the returned symbols when constructing exclude_dbs arguments for query_connectivity. Commo
• query_connectivity Query synaptic connectivity between Drosophila neuron classes across ALL connectome datasets simultaneously for comparative connectomics. This is NOT pre-cached
• get_predicted_neurotransmitters Get the PREDICTED neurotransmitter(s) for a Drosophila neuron class — itself or any subclass — from per-instance connectome predictions (each reconstructed neur
• get_known_neurotransmitters Get the KNOWN (curated) neurotransmitter(s) for a Drosophila neuron class and its subclasses, from the ontology's classification rather than per-instance predic
• get_hierarchy Build a hierarchy tree for a VFB term, showing ancestors (parents) and/or descendants (children). Use relationship "part_of" for brain region structure (e.g. "w

Details

• Version: 1.11.4
• Transports: streamable-http
• Uptime (7 days): 100%
• Median latency: 867 ms
• First indexed: 2026-11-01T10:08:15.311Z
• Last seen in registry: 2026-11-05T15:17:18.823Z
• Repository: https://github.com/VirtualFlyBrain/VFB3-MCP
• Website: https://virtualflybrain.org

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